ZEN, ANDREA
ZEN, ANDREA
DIPARTIMENTO DI FISICA "ETTORE PANCINI"
Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families
2008 Zen, A.; Carnevale, V.; Lesk, A. M.; Micheletti, C.
Small- and large-scale conformational changes of adenylate kinase: A molecular dynamics study of the subdomain motion and mechanics
2008 Pontiggia, F.; Zen, A.; Micheletti, C.
Fast and accurate quantum Monte Carlo for molecular crystals
2018 Zen, Andrea; Brandenburg, Jan Gerit; Klimeš, Jiří; Tkatchenko, Alexandre; Alfè, Dario; Michaelides, Angelos
Properties of the water to boron nitride interaction: From zero to two dimensions with benchmark accuracy
2017 Al-Hamdani, Yasmine S.; Rossi, Mariana; Alfè, Dario; Tsatsoulis, Theodoros; Ramberger, Benjamin; Brandenburg, Jan Gerit; Zen, Andrea; Kresse, Georg; Grüneis, Andreas; Tkatchenko, Alexandre; Michaelides, Angelos
General embedded cluster protocol for accurate modeling of oxygen vacancies in metal-oxides
2022 Shi, B. X.; Kapil, V.; Zen, A.; Chen, J.; Alavi, A.; Michaelides, A.
Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations
2016 Sosso, G. C.; Chen, J.; Cox, S. J.; Fitzner, M.; Pedevilla, P.; Zen, A.; Michaelides, A.
Hydration of NH4+ in Water: Bifurcated Hydrogen Bonding Structures and Fast Rotational Dynamics
2020 Guo, J.; Zhou, L.; Zen, A.; Michaelides, A.; Wu, X.; Wang, E.; Xu, L.; Chen, J.
Ice formation on kaolinite: Insights from molecular dynamics simulations
2016 Sosso, G. C.; Tribello, G. A.; Zen, A.; Pedevilla, P.; Michaelides, A.
Long-Range Ionic and Short-Range Hydration Effects Govern Strongly Anisotropic Clay Nanoparticle Interactions
2022 Zen, A.; Bui, T.; Bao Le, T. T.; Tay, W. J.; Chellappah, K.; Collins, I. R.; Rickman, R. D.; Striolo, A.; Michaelides, A.
Communication: Truncated non-bonded potentials can yield unphysical behavior in molecular dynamics simulations of interfaces
2017 Fitzner, M.; Joly, L.; Ma, M.; Sosso, G. C.; Zen, A.; Michaelides, A.
Defect-Dependent Corrugation in Graphene
2021 Thiemann, F. L.; Rowe, P.; Zen, A.; Muller, E. A.; Michaelides, A.
Beyond GGA total energies for solids and surfaces
2022 Zen, A.; Gruneis, A.; Alfe', D.; Rossi, M.
Materials and Molecular Modeling at the Exascale
2022 Keal, T. W.; Elena, A. -M.; Sokol, A. A.; Stoneham, K.; Probert, M. I. J.; Cucinotta, C. S.; Willock, D. J.; Logsdail, A. J.; Zen, A.; Hasnip, P. J.; Bush, I. J.; Watkins, M.; Alfe', D.; Skylaris, C. -K.; Curchod, B. F. E.; Cai, Q.; Woodley, S. M.
Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: An application to OB-fold domains
2009 Zen, A.; De Chiara, C.; Pastore, A.; Micheletti, C.
Optimized structure and vibrational properties by error affected potential energy surfaces
2012 Zen, A.; Zhelyazov, D.; Guidoni, L.
Molecular properties by quantum Monte Carlo: An investigation on the role of the wave function ansatz and the basis set in the water molecule
2013 Zen, A.; Luo, Y.; Sorella, S.; Guidoni, L.
Ab initio molecular dynamics with noisy forces: Validating the quantum Monte Carlo approach with benchmark calculations of molecular vibrational properties
2014 Luo, Y.; Zen, A.; Sorella, S.
TurboRVB: A many-body toolkit for ab initio electronic simulations by quantum Monte Carlo
2020 Nakano, K.; Attaccalite, C.; Barborini, M.; Capriotti, L.; Casula, M.; Coccia, E.; Dagrada, M.; Genovese, C.; Luo, Y.; Mazzola, G.; Zen, A.; Sorella, S.
Ab initio molecular dynamics simulation of liquid water by quantum Monte Carlo
2015 Zen, A.; Luo, Y.; Mazzola, G.; Guidoni, L.; Sorella, S.
The New Resonating Valence Bond Method for Ab-Initio Electronic Simulations
2014 Sorella, Sandro; Zen, Andrea
Titolo | Tipologia | Data di pubblicazione | Autore(i) | File |
---|---|---|---|---|
Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families | 1.1 Articolo in rivista | 2008 | Zen, A.; Carnevale, V.; Lesk, A. M.; Micheletti, C. | |
Small- and large-scale conformational changes of adenylate kinase: A molecular dynamics study of the subdomain motion and mechanics | 1.1 Articolo in rivista | 2008 | Pontiggia, F.; Zen, A.; Micheletti, C. | |
Fast and accurate quantum Monte Carlo for molecular crystals | 1.1 Articolo in rivista | 2018 | Zen, Andrea; Brandenburg, Jan Gerit; Klimeš, Jiří; Tkatchenko, Alexandre; Alfè, Dario; Michaelides, Angelos | |
Properties of the water to boron nitride interaction: From zero to two dimensions with benchmark accuracy | 1.1 Articolo in rivista | 2017 | Al-Hamdani, Yasmine S.; Rossi, Mariana; Alfè, Dario; Tsatsoulis, Theodoros; Ramberger, Benjamin; Brandenburg, Jan Gerit; Zen, Andrea; Kresse, Georg; Grüneis, Andreas; Tkatchenko, Alexandre; Michaelides, Angelos | |
General embedded cluster protocol for accurate modeling of oxygen vacancies in metal-oxides | 1.1 Articolo in rivista | 2022 | Shi, B. X.; Kapil, V.; Zen, A.; Chen, J.; Alavi, A.; Michaelides, A. | |
Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations | 1.1 Articolo in rivista | 2016 | Sosso, G. C.; Chen, J.; Cox, S. J.; Fitzner, M.; Pedevilla, P.; Zen, A.; Michaelides, A. | |
Hydration of NH4+ in Water: Bifurcated Hydrogen Bonding Structures and Fast Rotational Dynamics | 1.1 Articolo in rivista | 2020 | Guo, J.; Zhou, L.; Zen, A.; Michaelides, A.; Wu, X.; Wang, E.; Xu, L.; Chen, J. | |
Ice formation on kaolinite: Insights from molecular dynamics simulations | 1.1 Articolo in rivista | 2016 | Sosso, G. C.; Tribello, G. A.; Zen, A.; Pedevilla, P.; Michaelides, A. | |
Long-Range Ionic and Short-Range Hydration Effects Govern Strongly Anisotropic Clay Nanoparticle Interactions | 1.1 Articolo in rivista | 2022 | Zen, A.; Bui, T.; Bao Le, T. T.; Tay, W. J.; Chellappah, K.; Collins, I. R.; Rickman, R. D.; Striolo, A.; Michaelides, A. | |
Communication: Truncated non-bonded potentials can yield unphysical behavior in molecular dynamics simulations of interfaces | 1.1 Articolo in rivista | 2017 | Fitzner, M.; Joly, L.; Ma, M.; Sosso, G. C.; Zen, A.; Michaelides, A. | |
Defect-Dependent Corrugation in Graphene | 1.1 Articolo in rivista | 2021 | Thiemann, F. L.; Rowe, P.; Zen, A.; Muller, E. A.; Michaelides, A. | |
Beyond GGA total energies for solids and surfaces | 1.1 Articolo in rivista | 2022 | Zen, A.; Gruneis, A.; Alfe', D.; Rossi, M. | |
Materials and Molecular Modeling at the Exascale | 1.1 Articolo in rivista | 2022 | Keal, T. W.; Elena, A. -M.; Sokol, A. A.; Stoneham, K.; Probert, M. I. J.; Cucinotta, C. S.; Willock, D. J.; Logsdail, A. J.; Zen, A.; Hasnip, P. J.; Bush, I. J.; Watkins, M.; Alfe', D.; Skylaris, C. -K.; Curchod, B. F. E.; Cai, Q.; Woodley, S. M. | |
Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: An application to OB-fold domains | 1.1 Articolo in rivista | 2009 | Zen, A.; De Chiara, C.; Pastore, A.; Micheletti, C. | |
Optimized structure and vibrational properties by error affected potential energy surfaces | 1.1 Articolo in rivista | 2012 | Zen, A.; Zhelyazov, D.; Guidoni, L. | |
Molecular properties by quantum Monte Carlo: An investigation on the role of the wave function ansatz and the basis set in the water molecule | 1.1 Articolo in rivista | 2013 | Zen, A.; Luo, Y.; Sorella, S.; Guidoni, L. | |
Ab initio molecular dynamics with noisy forces: Validating the quantum Monte Carlo approach with benchmark calculations of molecular vibrational properties | 1.1 Articolo in rivista | 2014 | Luo, Y.; Zen, A.; Sorella, S. | |
TurboRVB: A many-body toolkit for ab initio electronic simulations by quantum Monte Carlo | 1.1 Articolo in rivista | 2020 | Nakano, K.; Attaccalite, C.; Barborini, M.; Capriotti, L.; Casula, M.; Coccia, E.; Dagrada, M.; Genovese, C.; Luo, Y.; Mazzola, G.; Zen, A.; Sorella, S. | |
Ab initio molecular dynamics simulation of liquid water by quantum Monte Carlo | 1.1 Articolo in rivista | 2015 | Zen, A.; Luo, Y.; Mazzola, G.; Guidoni, L.; Sorella, S. | |
The New Resonating Valence Bond Method for Ab-Initio Electronic Simulations | 2.1 Contributo in volume (Capitolo o Saggio) | 2014 | Sorella, Sandro; Zen, Andrea |