In recent years, the analysis of single cell RNA-sequencing (scRNA-seq) technology has been increasing. Although scRNA-seq is a powerful approach to studying the heterogene- ity of cells bringing an increasing number of discoveries in biomedical research, the analysis of such data is still challenging. To decipher the unknown cell heterogeneity in single-cell transcriptomic data, clustering approaches help to find subpopulations of cells based on their similarity in the gene expression profiles. Since there are many clustering methods, in this work we present an algorithm for the validation of the clustering to determine how well clusters approximate cell sub-types.
Robustness in single cell clustering / Policastro, Valeria; Righelli, Dario; Carissimo, Annamaria. - (2023). (Intervento presentato al convegno CIBB 2023 18TH CONFERENCE ON COMPUTATIONAL INTELLIGENCE METHODS FOR BIOINFORMATICS & BIOSTATISTICS tenutosi a Padova nel 6-8/9/2023).
Robustness in single cell clustering
Valeria Policastro;Dario Righelli;Annamaria Carissimo
2023
Abstract
In recent years, the analysis of single cell RNA-sequencing (scRNA-seq) technology has been increasing. Although scRNA-seq is a powerful approach to studying the heterogene- ity of cells bringing an increasing number of discoveries in biomedical research, the analysis of such data is still challenging. To decipher the unknown cell heterogeneity in single-cell transcriptomic data, clustering approaches help to find subpopulations of cells based on their similarity in the gene expression profiles. Since there are many clustering methods, in this work we present an algorithm for the validation of the clustering to determine how well clusters approximate cell sub-types.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.