GAMBARDELLA, GENNARO
GAMBARDELLA, GENNARO
DIPARTIMENTO DI INGEGNERIA CHIMICA, DEI MATERIALI E DELLA PRODUZIONE INDUSTRIALE
Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation
2013 De Cegli, R.; Iacobacci, S.; Flore, G.; Gambardella, G.; Mao, L.; Cutillo, L.; Lauria, M.; Klose, J.; Illingworth, E.; Banfi, S.; DI BERNARDO, Diego
Differential network analysis for the identification of condition-specific pathway activity and regulation.
2013 Gambardella, G; Moretti, Mn; de Cegli, R; Cardone, L; Peron, Adriano; DI BERNARDO, Diego
A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data
2015 Gambardella, Gennaro; Peluso, Ivana; Montefusco, Sandro; Bansal, Mukesh; Medina, Diego L; Lawrence, Neil; DI BERNARDO, Diego; MEDINA SANABRIA, Diego Luis
Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis.
2014 Racioppi, C; Kamal, A; Razy Krajka, F; Gambardella, G; Zanetti, L; DI BERNARDO, Diego; Sanges, R; Christiaen, L; Ristoratore, F.
The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells
2017 Gambardella, Gennaro; Carissimo, Annamaria; Chen, Amy; Cutillo, Luisa; Nowakowski, Tomasz J; DI BERNARDO, Diego; Blelloch, Robert
A tool for visualization and analysis of single-cell RNA-seq data based on text mining
2019 Gambardella, G.; Di Bernardo, D.
TRPV4 and purinergic receptor signalling pathways are separately linked in airway epithelia to CFTR and TMEM16A chloride channels
2019 Genovese, M.; Borrelli, Alessio; Venturini, A.; Guidone, D.; Caci, E.; Viscido, G.; Gambardella, G.; di Bernardo, D.; Scudieri, P.; Galietta, L. J. V.
GADD34 is a modulator of autophagy during starvation
2020 Gambardella, Gennaro; Staiano, Leopoldo; Moretti, Maria Nicoletta; De Cegli, Rossella; Fagnocchi, Luca; Di Tullio, Giuseppe; Polletti, Sara; Braccia, Clarissa; Armirotti, Andrea; Zippo, Alessio; Ballabio, Andrea; De Matteis, Maria Antonietta; di Bernardo, Diego
Cancer of unknown primary stem-like cells model multi-organ metastasis and unveil liability to MEK inhibition
2021 Verginelli, F.; Pisacane, A.; Gambardella, G.; D'Ambrosio, A.; Candiello, E.; Ferrio, M.; Panero, M.; Casorzo, L.; Benvenuti, S.; Cascardi, E.; Senetta, R.; Geuna, E.; Ballabio, A.; Montemurro, F.; Sapino, A.; Comoglio, P. M.; Boccaccio, C.
Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
2021 Slovin, S.; Carissimo, A.; Panariello, F.; Grimaldi, A.; Bouche, V.; Gambardella, G.; Cacchiarelli, D.
A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response
2022 Gambardella, G.; Viscido, G.; Tumaini, B.; Isacchi, A.; Bosotti, R.; di Bernardo, D.
β-catenin perturbations control differentiation programs in mouse embryonic stem cells
2022 Pedone, Elisa; Failli, Mario; Gambardella, Gennaro; De Cegli, Rossella; La Regina, Antonella; di Bernardo, Diego; Marucci, Lucia
O-linked mucin-type glycosylation regulates the transcriptional programme downstream of {EGFR}
2020 Tajadura-Ortega, Virginia; Gambardella, Gennaro; Skinner, Alexandra; Halim, Adnan; Van Coillie, Julie; Ter-Borch Gram Schjoldager, Katrine; Beatson, Richard; Graham, Rosalind; Achkova, Daniela; Taylor-Papadimitriou, Joyce; D Ciccarelli, Francesca; M Burchell, Joy
MEGA-V: Detection of variant gene sets in patient cohorts
2017 Gambardella, G.; Cereda, M.; Benedetti, L.; Ciccarelli, F. D.
Cancer of Unknown Primary (CUP): genetic evidence for a novel nosological entity? A case report
2020 Benvenuti, S.; Milan, M.; Geuna, E.; Pisacane, A.; Senetta, R.; Gambardella, G.; Stella, G. M.; Montemurro, F.; Sapino, A.; Boccaccio, C.; Comoglio, P. M.
Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes
2016 Cereda, M.; Gambardella, G.; Benedetti, L.; Iannelli, F.; Patel, D.; Basso, G.; Guerra, R. F.; Mourikis, T. P.; Puccio, I.; Sinha, S.; Laghi, L.; Spencer, J.; Rodriguez-Justo, M.; Ciccarelli, F. D.
TFEBexplorer: An integrated tool to study genes regulated by the stress-responsive Transcription Factor EB
2022 De Cegli, Rossella; Carrella, Diego; Siciliano, Diletta; Gambardella, Gennaro; Napolitano, Gennaro; DI MALTA, Chiara; Ballabio, Andrea; DI BERNARDO, Diego
Mutated axon guidance gene PLXNB2 sustains growth and invasiveness of stem cells isolated from cancers of unknown primary
2023 Brundu, Serena; Napolitano, Virginia; Franzolin, Giulia; Lo Cascio, Ettore; Mastrantonio, Roberta; Sardo, Gabriele; Cascardi, Eliano; Verginelli, Federica; Sarnataro, Sergio; Gambardella, Gennaro; Pisacane, Alberto; Arcovito, Alessandro; Boccaccio, Carla; M Comoglio, Paolo; Giraudo, Enrico; Tamagnone, Luca
MicroRNA 483‐3p overexpression unleashes invasive growth of metastatic colorectal cancer via NDRG1 downregulation and ensuing activation of the ERBB3 / AKT axis
2023 Candiello, Ermes; Reato, Gigliola; Verginelli, Federica; Gambardella, Gennaro; D′Ambrosio, Antonio; Calandra, Noemi; Orzan, Francesca; Iuliano, Antonella; Albano, Raffaella; Sassi, Francesco; Luraghi, Paolo; Comoglio, Paolo M.; Bertotti, Andrea; Trusolino, Livio; Boccaccio, Carla
Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data
2023 Franchini, Melania; Pellecchia, Simona; Viscido, Gaetano; Gambardella, Gennaro
| Titolo | Tipologia | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|---|
| Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation | 1.1 Articolo in rivista | 2013 | De Cegli, R.; Iacobacci, S.; Flore, G.; Gambardella, G.; Mao, L.; Cutillo, L.; Lauria, M.; Klose, J.; Illingworth, E.; Banfi, S.; DI BERNARDO, Diego | |
| Differential network analysis for the identification of condition-specific pathway activity and regulation. | 1.1 Articolo in rivista | 2013 | Gambardella, G; Moretti, Mn; de Cegli, R; Cardone, L; Peron, Adriano; DI BERNARDO, Diego | |
| A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data | 1.1 Articolo in rivista | 2015 | Gambardella, Gennaro; Peluso, Ivana; Montefusco, Sandro; Bansal, Mukesh; Medina, Diego L; Lawrence, Neil; DI BERNARDO, Diego; MEDINA SANABRIA, Diego Luis | |
| Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis. | 1.1 Articolo in rivista | 2014 | Racioppi, C; Kamal, A; Razy Krajka, F; Gambardella, G; Zanetti, L; DI BERNARDO, Diego; Sanges, R; Christiaen, L; Ristoratore, F. | |
| The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells | 1.1 Articolo in rivista | 2017 | Gambardella, Gennaro; Carissimo, Annamaria; Chen, Amy; Cutillo, Luisa; Nowakowski, Tomasz J; DI BERNARDO, Diego; Blelloch, Robert | |
| A tool for visualization and analysis of single-cell RNA-seq data based on text mining | 1.1 Articolo in rivista | 2019 | Gambardella, G.; Di Bernardo, D. | |
| TRPV4 and purinergic receptor signalling pathways are separately linked in airway epithelia to CFTR and TMEM16A chloride channels | 1.1 Articolo in rivista | 2019 | Genovese, M.; Borrelli, Alessio; Venturini, A.; Guidone, D.; Caci, E.; Viscido, G.; Gambardella, G.; di Bernardo, D.; Scudieri, P.; Galietta, L. J. V. | |
| GADD34 is a modulator of autophagy during starvation | 1.1 Articolo in rivista | 2020 | Gambardella, Gennaro; Staiano, Leopoldo; Moretti, Maria Nicoletta; De Cegli, Rossella; Fagnocchi, Luca; Di Tullio, Giuseppe; Polletti, Sara; Braccia, Clarissa; Armirotti, Andrea; Zippo, Alessio; Ballabio, Andrea; De Matteis, Maria Antonietta; di Bernardo, Diego | |
| Cancer of unknown primary stem-like cells model multi-organ metastasis and unveil liability to MEK inhibition | 1.1 Articolo in rivista | 2021 | Verginelli, F.; Pisacane, A.; Gambardella, G.; D'Ambrosio, A.; Candiello, E.; Ferrio, M.; Panero, M.; Casorzo, L.; Benvenuti, S.; Cascardi, E.; Senetta, R.; Geuna, E.; Ballabio, A.; Montemurro, F.; Sapino, A.; Comoglio, P. M.; Boccaccio, C. | |
| Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview | 2.1 Contributo in volume (Capitolo o Saggio) | 2021 | Slovin, S.; Carissimo, A.; Panariello, F.; Grimaldi, A.; Bouche, V.; Gambardella, G.; Cacchiarelli, D. | |
| A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response | 1.1 Articolo in rivista | 2022 | Gambardella, G.; Viscido, G.; Tumaini, B.; Isacchi, A.; Bosotti, R.; di Bernardo, D. | |
| β-catenin perturbations control differentiation programs in mouse embryonic stem cells | 1.1 Articolo in rivista | 2022 | Pedone, Elisa; Failli, Mario; Gambardella, Gennaro; De Cegli, Rossella; La Regina, Antonella; di Bernardo, Diego; Marucci, Lucia | |
| O-linked mucin-type glycosylation regulates the transcriptional programme downstream of {EGFR} | 1.1 Articolo in rivista | 2020 | Tajadura-Ortega, Virginia; Gambardella, Gennaro; Skinner, Alexandra; Halim, Adnan; Van Coillie, Julie; Ter-Borch Gram Schjoldager, Katrine; Beatson, Richard; Graham, Rosalind; Achkova, Daniela; Taylor-Papadimitriou, Joyce; D Ciccarelli, Francesca; M Burchell, Joy | |
| MEGA-V: Detection of variant gene sets in patient cohorts | 1.1 Articolo in rivista | 2017 | Gambardella, G.; Cereda, M.; Benedetti, L.; Ciccarelli, F. D. | |
| Cancer of Unknown Primary (CUP): genetic evidence for a novel nosological entity? A case report | 1.1 Articolo in rivista | 2020 | Benvenuti, S.; Milan, M.; Geuna, E.; Pisacane, A.; Senetta, R.; Gambardella, G.; Stella, G. M.; Montemurro, F.; Sapino, A.; Boccaccio, C.; Comoglio, P. M. | |
| Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes | 1.1 Articolo in rivista | 2016 | Cereda, M.; Gambardella, G.; Benedetti, L.; Iannelli, F.; Patel, D.; Basso, G.; Guerra, R. F.; Mourikis, T. P.; Puccio, I.; Sinha, S.; Laghi, L.; Spencer, J.; Rodriguez-Justo, M.; Ciccarelli, F. D. | |
| TFEBexplorer: An integrated tool to study genes regulated by the stress-responsive Transcription Factor EB | 1.1 Articolo in rivista | 2022 | De Cegli, Rossella; Carrella, Diego; Siciliano, Diletta; Gambardella, Gennaro; Napolitano, Gennaro; DI MALTA, Chiara; Ballabio, Andrea; DI BERNARDO, Diego | |
| Mutated axon guidance gene PLXNB2 sustains growth and invasiveness of stem cells isolated from cancers of unknown primary | 1.1 Articolo in rivista | 2023 | Brundu, Serena; Napolitano, Virginia; Franzolin, Giulia; Lo Cascio, Ettore; Mastrantonio, Roberta; Sardo, Gabriele; Cascardi, Eliano; Verginelli, Federica; Sarnataro, Sergio; Gambardella, Gennaro; Pisacane, Alberto; Arcovito, Alessandro; Boccaccio, Carla; M Comoglio, Paolo; Giraudo, Enrico; Tamagnone, Luca | |
| MicroRNA 483‐3p overexpression unleashes invasive growth of metastatic colorectal cancer via NDRG1 downregulation and ensuing activation of the ERBB3 / AKT axis | 1.1 Articolo in rivista | 2023 | Candiello, Ermes; Reato, Gigliola; Verginelli, Federica; Gambardella, Gennaro; D′Ambrosio, Antonio; Calandra, Noemi; Orzan, Francesca; Iuliano, Antonella; Albano, Raffaella; Sassi, Francesco; Luraghi, Paolo; Comoglio, Paolo M.; Bertotti, Andrea; Trusolino, Livio; Boccaccio, Carla | |
| Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data | 1.1 Articolo in rivista | 2023 | Franchini, Melania; Pellecchia, Simona; Viscido, Gaetano; Gambardella, Gennaro |