Mixtures of organic amendments and biochar promote beneficial soil microbiota and affect Fusarium oxysporum f. sp. lactucae , Rhizoctonia solani and Sclerotinia minor disease suppression

The use of soil fumigants and fungicides to control soilborne pathogens is reduced due to awareness of their negative drawbacks. Long-term application of such agrochemicals negatively affects soil microbiota and reduces natural soil suppressiveness. We investigated long-term impacts of biochar and not-pyrogenic organic amendment (OAs: manure, alfalfa straw and glucose), on disease suppression compared with conventional management in three pathosystems: Fusarium oxysporum f. sp. lactucae (FOL)–lettuce, Rhizoctonia solani–tomato and Sclerotinia sclerotiorum–lettuce, by conditioning soil for 2 years. Soil analyses included pH, electrical conductivity, organic carbon, total nitrogen, C:N ratio, N-NO3−, N-NH4+, cation exchange capacity, available phosphorus, Ca2+, Mg2+, K+, Na+, fluorescein diacetate (FDA), and total and active limestone. Soil microbiota was characterized by combining BIOLOG EcoPlates with next-generation sequencing of 16S and 18S rRNA genes. Soil amended with OAs generally...